Murray Lab Bioinformatics Tools
Division of Earth and Ecosystem Sciences

To download a script: right click and select 'Save Target As'

Program Name	Function	Input file(s)	PERL module requirements
blastparser_csr1.0.pl	Parse the output of a standalone BLAST search	BLAST output	BioPerl^a
discard_shortseqs1.0.pl	Discard sequences below a specified length	FASTA	BioPerl^a
fasta_length1.0.pl	SequenceID and length (tab delimited output)	FASTA	BioPerl^a
gc_percent1.0.pl	SequenceID and GC% (tab delimited output)	FASTA	BioPerl^a
retrieve_sequence_subset1.0.pl	Retrieve desired sequences	SeqID list, FASTA file	BioPerl^a
tag_fasta_header1.0.pl	Add a tag to the fasta header line	FASTA	BioPerl^a
two_list_comparison1.0.pl	Union, intersection and unique items from two lists	Two lists	List::Compare^b
^aInstructions for downloading and installing BioPerl are available here. ^bList::Compare is available from CPAN. Documentation is available here. Please contact Christian Riesenfeld for additional information.